PlotCompositionMap: Create cluster composition map

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Creates a plot showing the composition of each cluster in terms of manually annotated populations. You need to specify a sub-pipeline and n-parameter iteration(s) by index. If multiple n-parameter iterations are chosen, a list of plots is returned.

Usage

PlotCompositionMap(benchmark, idx.subpipeline, idcs.n_param = NULL)

Arguments

benchmark	an object of class Benchmark, as generated by the constructor Benchmark and evaluated using Evaluate
idx.subpipeline	integer value: index of sub-pipeline that includes a clustering step
idcs.n_param	integer or vector of integers: indices of n-parameter iteration(s) of interest. Default value is NULL (all of them, or n-parameter was not used)

Value

list of plots, one per each n-parameter iteration

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.