PlotNParameterMap_Clustering: Plot an _n_-parameter map for clustering

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Creates plots showing values of clustering evaluation metrics and how they change with different DR or clustering n-parameters. If you choose a sub-pipeline where one n-parameter (for instance, latent-space projection dimensionality or target cluster count) varies, a line plot is produced for each metrics. If you choose one where both n-parameters (for the projection step and the clustering step) vary, a heatmap is produced instead. If neither n-parameter varies, this function returns NULL.

Usage

PlotNParameterMap_Clustering(benchmark, idx.subpipeline)

Arguments

benchmark	an object of class Benchmark, as generated by the constructor Benchmark and evaluated using Evaluate.Benchmark
idx.subpipeline	integer value: index of subpipeline that includes a clustering step

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.