PlotClusterHeatmap: Create a heatmap of expression value medians per cluster

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Creates a heatmap showing expression value medians per each cluster, taking clusters from a chosen subpipeline (and n-parameter iteration(s)). If multiple n-parameter iterations are chosen, a list of plots is generated.

Usage

PlotClusterHeatmap(benchmark, idx.subpipeline, idcs.n_param = NULL)

Arguments

benchmark	object of type Benchmark, as generated by the constructor Benchmark and evaluated using Evaluate
idx.subpipeline	integer value: index of subpipeline that includes a clustering step
idcs.n_param	integer or vector of integers: indices of n-parameter(s) iterations of interest. Default value is NULL, which translates to all n-parameter iterations of the given sub-pipeline (or none if n-parameters were not used)

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.