GetRMSDPerCluster: Get RMSDs of each cluster in clustering result of an...

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Returns the vector of RMSDs per cluster.

Usage

GetRMSDPerCluster(
  benchmark,
  idx.subpipeline,
  idx.n_param = NULL,
  idx.run = NULL
)

Arguments

benchmark	object of type Benchmark
idx.subpipeline	integer: index of a sub-pipeline of benchmark that includes a clustering step
idx.n_param	integer: index of n-parameter iteration of a subpipeline of benchmark (if n-parameters specified). Default value is NULL
idx.run	integer: index of clustering run if repeated runs were evaluated. Default value is 1

See Also

• Benchmark: constructs a Benchmark object (benchmark pipeline set-up)

• Evaluate: runs all benchmark sub-pipelines and scores the performance of each tool

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.