GetClusteringScores: Get 'Benchmark' clustering evaluation scores

In davnovak/SingleBench: Framework for benchmarking and optimising dimension-reduction and clustering pipelines in expression data analysis

Description

Extracts list of evaluation scores and other products of evaluating performance of a clustering tool used in a subpipeline n-iteration in a Benchmark object (benchmark pipeline set-up).

Usage

GetClusteringScores(benchmark, idx.subpipeline, idcs.n_param = NULL)

Arguments

benchmark	object of type Benchmark
idx.subpipeline	integer: index of a subpipeline of benchmark
idx.n_param	integer: index of an n-parameter iteration of a sub-pipeline of benchmark

See Also

• Benchmark: constructs a Benchmark object (benchmark pipeline set-up)

• Evaluate: runs all benchmark sub-pipelines and scores the performance of each tool

davnovak/SingleBench documentation built on Dec. 19, 2021, 9:10 p.m.