getATACfragments: getATACfragments
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R
Description
Usage
Arguments
Value
Author(s)
Description
Given a GAlignmentPairs or GAlignments object, return a GRanges object containing the fragment (or insertion site for single-end data)
Usage
1
getATACfragments(ga, offsetTn = TRUE)
Arguments
ga
GAlignmentPairs (or GAlignments for single-end sequencing) object
offsetTn
apply offsets for Tn5 dimer cut site (+4 bp on genomic + strand; -4 bp on genomic - strand)
Value
GRanges object containing derived insertions. For paired-end data (recommended), the width of the resulting ranges corresponds to the insert size
for single-end data, the width is set to 1bp
Author(s)
Fabian Mueller
demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.
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Description Usage Arguments Value Author(s)
Description
Given a GAlignmentPairs or GAlignments object, return a GRanges object containing the fragment (or insertion site for single-end data)
Usage
1 | getATACfragments(ga, offsetTn = TRUE)
|
Arguments
ga |
|
offsetTn |
apply offsets for Tn5 dimer cut site (+4 bp on genomic + strand; -4 bp on genomic - strand) |
Value
GRanges object containing derived insertions. For paired-end data (recommended), the width of the resulting ranges corresponds to the insert size
for single-end data, the width is set to 1bp
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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