getChromVarDev-DsATAC-method: getChromVarDev-methods
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R
Description
Usage
Arguments
Value
Author(s)
Description
Compute chromVar deviations
Usage
1
2
## S4 method for signature 'DsATAC'
getChromVarDev(.object, type, motifs = "jaspar")
Arguments
.object
DsATAC object
type
character string specifying the region type
motifs
either a character string (currently only "jaspar" and sets contained in chromVARmotifs ("homer", "encode", "cisbp") are supported) or an object containing PWMs
that can be used by motifmatchr::matchMotifs (such as an PFMatrixList or PWMatrixList object)
Value
a data.frame summarizing Fisher's Exact Test enrichment statistics for each motif
Author(s)
Fabian Mueller
demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.
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Description Usage Arguments Value Author(s)
Description
Compute chromVar deviations
Usage
1 2 | ## S4 method for signature 'DsATAC'
getChromVarDev(.object, type, motifs = "jaspar")
|
Arguments
.object |
|
type |
character string specifying the region type |
motifs |
either a character string (currently only "jaspar" and sets contained in |
Value
a data.frame summarizing Fisher's Exact Test enrichment statistics for each motif
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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