getCounts-DsATAC-method: getCounts-methods

In demuellae/ChrAccR: Analyzing chromatin accessibility data in R

Description

Return table of count values

Usage

## S4 method for signature 'DsATAC'
getCounts(
  .object,
  type,
  i = NULL,
  j = NULL,
  asMatrix = TRUE,
  naIsZero = TRUE,
  allowSparseMatrix = FALSE
)

Arguments

.object	DsATAC object
type	character string specifying the region type
i	(optional) row (region) indices
j	(optional) column (sample) indices
asMatrix	return a matrix object instead of the internal representation
naIsZero	should NAs in the count matrix be considered 0 value (instead of unknown/missing)
allowSparseMatrix	if asMatrix: allow for sparse matrices as returned data format

Value

Matrix containing counts for each region and sample

Author(s)

Fabian Mueller

demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.