getCountsSE-DsATAC-method: getCountsSE-methods

In demuellae/ChrAccR: Analyzing chromatin accessibility data in R

Description

Return a SummarizedExperiment object of count values

Usage

## S4 method for signature 'DsATAC'
getCountsSE(.object, type, naIsZero = TRUE)

Arguments

.object	DsATAC object
type	character string specifying the region type
naIsZero	should NAs in the count matrix be considered 0 value (instead of unknown/missing)

Value

SummarizedExperiment containing counts for each region and sample

Author(s)

Fabian Mueller

Examples

## Not run: 
dsa <- ChrAccRex::loadExample("dsAtac_ia_example")
se <- getCountsSE(dsa, "IA_prog_peaks")
se

## End(Not run)

demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.