getComparisonTable-DsAcc-method: getComparisonTable-methods
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R

Description Usage Arguments Value Author(s)

Retrieve a table describing pairwise comparisons on a DsAcc object

1 2	## S4 method for signature 'DsAcc' getComparisonTable(.object, cols = NULL, compNames = NULL, minGroupSize = 2L)

`.object`	`DsAcc` object
`cols`	column names in the sample annotation table to consider for pairwise comparisons
`compNames`	vector of character strings specifying a fixed comparison names to be parsed (format "$GRP1_NAME vs $GRP1_NAME [$ANNOTATION_COLUMN]")
`minGroupSize`	Minimum size of a group to be used in comparison. Affects the annotation columns that will be used for comparisons.

a data.frame with comparison inforamtion containing columns for the comparison name (compName), column in the annotation table (compCol) and group names for the two groups in the comparison (grp1Name, grp2Name),

Fabian Mueller

demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.