getInsertionKmerFreq-DsATAC-method: getInsertionKmerFreq-methods
In demuellae/ChrAccR: Analyzing chromatin accessibility data in R
Description
Usage
Arguments
Value
Author(s)
Description
compute kmer frequencies at insertion sites for each sample
Usage
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## S4 method for signature 'DsATAC'
getInsertionKmerFreq(
.object,
samples = getSamples(.object),
k = 6,
normGenome = FALSE
)
Arguments
.object
DsATAC object
samples
sample identifiers
k
length of the kmer
normGenome
should the result be normalized by genome-wide kmer frequencies
Value
a matrix containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)
Author(s)
Fabian Mueller
demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.
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Description Usage Arguments Value Author(s)
Description
compute kmer frequencies at insertion sites for each sample
Usage
1 2 3 4 5 6 7 | ## S4 method for signature 'DsATAC'
getInsertionKmerFreq(
.object,
samples = getSamples(.object),
k = 6,
normGenome = FALSE
)
|
Arguments
.object |
|
samples |
sample identifiers |
k |
length of the kmer |
normGenome |
should the result be normalized by genome-wide kmer frequencies |
Value
a matrix containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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