getDESeq2Dataset-DsATAC-method: getDESeq2Dataset-methods

In demuellae/ChrAccR: Analyzing chromatin accessibility data in R

Description

Retrieve a differential expression dataset computed with DESeq2

Usage

## S4 method for signature 'DsATAC'
getDESeq2Dataset(.object, regionType, designCols, ...)

Arguments

.object	DsATAC object
regionType	character string specifying the region type
designCols	column names in the sample annotation potentially used to create the design matrix
...	parameters passed on to DESeq2::DESeq

Value

DESeqDataSet as returned by DESeq2::DESeq

Author(s)

Fabian Mueller

Examples

## Not run: 
dsa <- ChrAccRex::loadExample("dsAtac_ia_example")
dds <- getDESeq2Dataset(dsa, "IA_prog_peaks", designCols=c("donor", "stimulus", "cellType"))
dds

## End(Not run)

demuellae/ChrAccR documentation built on Jan. 20, 2020, 3:03 a.m.