ellispatrick/spicyR: Spatial analysis of in situ cytometry data
The spicyR package provides a framework for performing inference on changes in spatial relationships between pairs of cell types for cell-resolution spatial omics technologies. spicyR consists of three primary steps: (i) summarizing the degree of spatial localization between pairs of cell types for each image; (ii) modelling the variability in localization summary statistics as a function of cell counts and (iii) testing for changes in spatial localizations associated with a response variable.
Getting started
Browse package contents
Package details |
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| Bioconductor views | CellBasedAssays SingleCell Spatial |
| Maintainer | |
| License | GPL (>=2) |
| Version | 1.19.3 |
| URL | https://ellispatrick.github.io/spicyR/ https://github.com/SydneyBioX/spicyR https://sydneybiox.github.io/spicyR/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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