add_clonotype_annotations: Add VDJ information using some code I found.
In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions
add_clonotype_annotations R Documentation
Add VDJ information using some code I found.
Description
The original implementation of this idea resides at:
https://ucdavis-bioinformatics-training.github.io/2020-Advanced_Single_Cell_RNA_Seq/data_analysis/VDJ_Analysis_fixed
Usage
add_clonotype_annotations(scd, start_path, type = "t")
Arguments
scd
Seurat object to which we will add some information.
start_path
root of the 10x data in which the vdj information should reside.
type
The type of VDJ we expect, heavy(B) or light(T).
Details
The seurat documentation always uses 'obj' for their
datastructures; I chose to use 'scd' to signify that I am
explicitly adding a couple pieces of information to them. They
remain the datastructures returned by seurat.
Value
The Seurat object with some new information.
elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.
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| add_clonotype_annotations | R Documentation |
Add VDJ information using some code I found.
Description
The original implementation of this idea resides at: https://ucdavis-bioinformatics-training.github.io/2020-Advanced_Single_Cell_RNA_Seq/data_analysis/VDJ_Analysis_fixed
Usage
add_clonotype_annotations(scd, start_path, type = "t")
Arguments
scd |
Seurat object to which we will add some information. |
start_path |
root of the 10x data in which the vdj information should reside. |
type |
The type of VDJ we expect, heavy(B) or light(T). |
Details
The seurat documentation always uses 'obj' for their datastructures; I chose to use 'scd' to signify that I am explicitly adding a couple pieces of information to them. They remain the datastructures returned by seurat.
Value
The Seurat object with some new information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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