add_clonotype_annotations: Add VDJ information using some code I found.

View source: R/singlecell.R

add_clonotype_annotationsR Documentation

Add VDJ information using some code I found.

Description

The original implementation of this idea resides at: https://ucdavis-bioinformatics-training.github.io/2020-Advanced_Single_Cell_RNA_Seq/data_analysis/VDJ_Analysis_fixed

Usage

add_clonotype_annotations(scd, start_path, type = "t")

Arguments

scd

Seurat object to which we will add some information.

start_path

root of the 10x data in which the vdj information should reside.

type

The type of VDJ we expect, heavy(B) or light(T).

Details

The seurat documentation always uses 'obj' for their datastructures; I chose to use 'scd' to signify that I am explicitly adding a couple pieces of information to them. They remain the datastructures returned by seurat.

Value

The Seurat object with some new information.


elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.