calculate_aucc: Calculate the Area under the Concordance Curve.

View source: R/de_shared.R

calculate_auccR Documentation

Calculate the Area under the Concordance Curve.

Description

This is taken verbatim from a recent paper sent to me by Julie Cridland.

Usage

calculate_aucc(
  tbl,
  tbl2 = NULL,
  px = "deseq_adjp",
  py = "edger_adjp",
  lx = "deseq_logfc",
  ly = "edger_logfc",
  cor_method = "pearson",
  topn = 0.1
)

Arguments

tbl

DE table

tbl2

Second table

px

first set of p-values column

py

second set

lx

first set of logFCs column

ly

second set

cor_method

Method to pass to cor().

topn

Number of genes to consider (or percentage of the whole).


elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.