calculate_aucc: Calculate the Area under the Concordance Curve.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Calculate the Area under the Concordance Curve.

Description

This is taken verbatim from a recent paper sent to me by Julie Cridland.

Usage

calculate_aucc(
  tbl,
  tbl2 = NULL,
  px = "deseq_adjp",
  py = "edger_adjp",
  lx = "deseq_logfc",
  ly = "edger_logfc",
  cor_method = "pearson",
  topn = 0.1
)

Arguments

tbl	DE table
tbl2	Second table
px	first set of p-values column
py	second set
lx	first set of logFCs column
ly	second set
cor_method	Method to pass to cor().
topn	Number of genes to consider (or percentage of the whole).

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.