check_includes: Convert a vector of yes/no by DE method to a list.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

Convert a vector of yes/no by DE method to a list.

Description

This compiles the set of possible methods to include in an all_pairwise() from a series of booleans into a simpler list and checks that the elements have some data that may be used.

Usage

check_includes(
  apr,
  basic = TRUE,
  deseq = TRUE,
  ebseq = TRUE,
  edger = TRUE,
  dream = TRUE,
  limma = TRUE,
  noiseq = TRUE
)

Arguments

apr	The result from all_pairwise()
basic	The user wants the basic analysis, let us see if we can provide it here.
deseq	The user wants DESeq2.
ebseq	The user wants EBSeq.
edger	The user wants EdgeR.
dream	The user wants the variancePartition method.
limma	The user wants limma.
noiseq	The user wants NoiSeq.

Value

List containing TRUE/FALSE for each method desired, depending on if we actually have the relevant data.

elsayed-lab/hpgltools documentation built on April 8, 2024, 1:30 a.m.