choose_limma_dataset: A sanity check that a given set of data is suitable for...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A sanity check that a given set of data is suitable for analysis by limma.

Description

Take an expt and poke at it to ensure that it will not result in troubled limma results.

Usage

choose_limma_dataset(
  input,
  force = FALSE,
  which_voom = "limma",
  verbose = TRUE,
  ...
)

Arguments

input	Expressionset containing expt object.
force	Ingore warnings and use the provided data asis.
which_voom	Choose between limma'svoom, voomWithQualityWeights, or the hpgl equivalents.
verbose	Print some information about what is happening?
...	Extra arguments passed to arglist.

Value

dataset suitable for limma analysis

See Also

[limma] [choose_dataset()]

elsayed-lab/hpgltools documentation built on April 8, 2024, 1:30 a.m.