choose_limma_dataset: A sanity check that a given set of data is suitable for...

View source: R/de_shared.R

choose_limma_datasetR Documentation

A sanity check that a given set of data is suitable for analysis by limma.

Description

Take an expt and poke at it to ensure that it will not result in troubled limma results.

Usage

choose_limma_dataset(
  input,
  force = FALSE,
  which_voom = "limma",
  verbose = TRUE,
  ...
)

Arguments

input

Expressionset containing expt object.

force

Ingore warnings and use the provided data asis.

which_voom

Choose between limma'svoom, voomWithQualityWeights, or the hpgl equivalents.

verbose

Print some information about what is happening?

...

Extra arguments passed to arglist.

Value

dataset suitable for limma analysis

See Also

[limma] [choose_dataset()]


elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.