circos_check_chromosomes | R Documentation |
This is mostly intended to stop things early if I accidently use the wrong reference genome, but it currently does return the number of observed chrosomes.
circos_check_chromosomes(
cfg,
df,
annot_chr_column = "chr",
annot_gene_column = "rownames",
df_chr_column = "names",
df_gene_column = NULL
)
cfg |
circos configuration object. |
df |
dataframe of chromsome information. |
annot_chr_column |
Column containing the chromosome names. |
annot_gene_column |
Column containing the gene IDs. |
df_chr_column |
Column in the cfg df containing the chromosome names. |
df_gene_column |
Column containing the gene names. |
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