choose_binom_dataset: A sanity check that a given set of data is suitable for...

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A sanity check that a given set of data is suitable for methods which assume a negative binomial distribution of input.

Description

Take an expt and poke at it to ensure that it will not result in troubled results.

Usage

choose_binom_dataset(input, verbose = TRUE, force = FALSE, ...)

Arguments

input	Expressionset containing expt object.
verbose	Print some information about what is happening?
force	Ignore every warning and just use this data.
...	Extra arguments passed to arglist.

Details

Invoked by deseq_pairwise() and edger_pairwise().

Value

dataset suitable for limma analysis

See Also

[DESeq2] [edgeR] [choose_basic_dataset()] [choose_limma_dataset()]

elsayed-lab/hpgltools documentation built on May 9, 2024, 5:02 a.m.