cbcb_combat: A modified version of comBatMod.

In elsayed-lab/hpgltools: A pile of (hopefully) useful R functions

A modified version of comBatMod.

Description

This is a hack of Kwame Okrah's combatMod to make it not fail on corner-cases. This was mostly copy/pasted from https://github.com/kokrah/cbcbSEQ/blob/master/R/transform.R

Usage

cbcb_combat(dat, batch, mod, noscale = TRUE, prior.plots = FALSE, ...)

Arguments

dat	Df to modify.
batch	Factor of batches.
mod	Factor of conditions.
noscale	The normal 'scale' option squishes the data too much, so this defaults to TRUE.
prior.plots	Print out prior plots?
...	Extra options are passed to arglist

Value

Df of batch corrected data

See Also

[sva] [sva::ComBat()]

Examples

## Not run: 
 df_new = cbcb_combat(df, batches, model)

## End(Not run)

elsayed-lab/hpgltools documentation built on April 8, 2024, 1:30 a.m.