Files in federicomarini/GeneTonic

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

CODE_OF_CONDUCT.md LICENSE.md NEWS.md R/GeneTonic-data.R R/GeneTonic-extras.R R/GeneTonic-pkg.R R/GeneTonic.R R/check_inputs.R R/enhance_table.R R/enrichment_map.R R/export_for_iSEE.R R/gene_plot.R R/ggs_graph.R R/gs_alluvial.R R/gs_cluster.R R/gs_dendro.R R/gs_distances.R R/gs_fuzzy.R R/gs_heatmap.R R/gs_mds.R R/gs_radar.R R/gs_shaker.R R/gs_simplify.R R/gs_summaries.R R/gs_upset.R R/gs_volcano.R R/happy_hour.R R/signature_volcano.R README.Rmd README.md inst/extdata/GeneTonic101.md inst/extdata/about.md inst/extdata/cocktail_recipe.Rmd inst/extdata/help_gtl.md inst/scripts/create_gt_data.R man/GeneTonic-pkg.Rd man/GeneTonic.Rd man/GeneTonicList.Rd man/check_colors.Rd man/checkup_GeneTonic.Rd man/checkup_gtl.Rd man/cluster_markov.Rd man/create_jaccard_matrix.Rd man/create_kappa_matrix.Rd man/create_upsetdata.Rd man/describe_gtl.Rd man/deseqresult2df.Rd man/distill_enrichment.Rd man/dot-check_pandoc.Rd man/editor_to_vector_sanitized.Rd man/enhance_table.Rd man/enrichment_map.Rd man/enrichr_output_macrophage.Rd man/export_for_iSEE.Rd man/export_to_sif.Rd man/fgseaRes.Rd man/gene_plot.Rd man/geneinfo_2_html.Rd man/get_aggrscores.Rd man/get_expression_values.Rd man/ggs_backbone.Rd man/ggs_graph.Rd man/go_2_html.Rd man/gostres_macrophage.Rd man/gs_alluvial.Rd man/gs_dendro.Rd man/gs_fuzzyclustering.Rd man/gs_heatmap.Rd man/gs_horizon.Rd man/gs_mds.Rd man/gs_radar.Rd man/gs_scores.Rd man/gs_scoresheat.Rd man/gs_simplify.Rd man/gs_summary_heat.Rd man/gs_summary_overview.Rd man/gs_summary_overview_pair.Rd man/gs_upset.Rd man/gs_volcano.Rd man/happy_hour.Rd man/map2color.Rd man/overlap_coefficient.Rd man/overlap_jaccard_index.Rd man/res_macrophage_IFNg_vs_naive.Rd man/shake_davidResult.Rd man/shake_enrichResult.Rd man/shake_enrichrResult.Rd man/shake_fgseaResult.Rd man/shake_gprofilerResult.Rd man/shake_gsenrichResult.Rd man/shake_topGOtableResult.Rd man/signature_volcano.Rd man/styleColorBar_divergent.Rd man/summarize_ggs_hubgenes.Rd man/topgoDE_macrophage_IFNg_vs_naive.Rd tests/testthat.R tests/testthat/setuptests_genetonic.R tests/testthat/test-GeneTonic.R tests/testthat/test-GeneTonic_extras.R tests/testthat/test-check_inputs.R tests/testthat/test-enhance_tables.R tests/testthat/test-enrichment_map.R tests/testthat/test-export_for_iSEE.R tests/testthat/test-gene_plot.R tests/testthat/test-ggs_graph.R tests/testthat/test-gs_alluvial.R tests/testthat/test-gs_cluster.R tests/testthat/test-gs_dendro.R tests/testthat/test-gs_distances.R tests/testthat/test-gs_fuzzy.R tests/testthat/test-gs_heatmap.R tests/testthat/test-gs_mds.R tests/testthat/test-gs_radar.R tests/testthat/test-gs_scores.R tests/testthat/test-gs_shaker.R tests/testthat/test-gs_simplify.R tests/testthat/test-gs_summaries.R tests/testthat/test-gs_upset.R tests/testthat/test-gs_volcano.R tests/testthat/test-happy_hour.R tests/testthat/test-signature_volcano.R vignettes/GeneTonic_manual.Rmd