API for francescojm/CRISPRcleanR
Unsupervised correction of gene independent cell responses to CRISPR-cas9 targeting
| Global functions | |
|---|---|
| AVANA_Library | Man page |
| BAGEL_essential | Man page |
| BAGEL_nonEssential | Man page |
| Brunello_Library | Man page |
| CCLE.gisticCNA | Man page |
| CL.subset | Man page |
| EPLC.272HcorrectedFCs | Man page |
| EssGenes.DNA_REPLICATION_cons | Man page |
| EssGenes.HISTONES | Man page |
| EssGenes.KEGG_rna_polymerase | Man page |
| EssGenes.PROTEASOME_cons | Man page |
| EssGenes.SPLICEOSOME_cons | Man page |
| EssGenes.ribosomalProteins | Man page |
| GDSC.CL_annotation | Man page |
| GDSC.geneLevCNA | Man page |
| GeCKO_Library_v2 | Man page |
| HT.29correctedFCs | Man page |
| KY_Library_v1.0 | Man page |
| KY_Library_v1.1 | Man page |
| MiniLibCas9_Library | Man page |
| RNAseq.fpkms | Man page |
| Whitehead_Library | Man page |
| ccr.AnalysisPipeline | Man page Source code |
| ccr.BAM2counts | Man page Source code |
| ccr.CreateLibraryIndex | Man page Source code |
| ccr.ExecPipelineStep | Source code |
| ccr.ExecuteMageck | Man page Source code |
| ccr.ExportCorrectedFCsToWeb | Source code |
| ccr.FASTQ2counts | Man page Source code |
| ccr.GWclean | Man page Source code |
| ccr.MAGeCK2counts | Source code |
| ccr.NormfoldChanges | Man page Source code |
| ccr.PlainTsvFile | Man page Source code |
| ccr.PrRc_Curve | Man page Source code |
| ccr.PrintPipelineParams | Source code |
| ccr.ROC_Curve | Man page Source code |
| ccr.RecallCurves | Man page Source code |
| ccr.RemoveExtraFiles | Man page Source code |
| ccr.VisDepAndSig | Man page Source code |
| ccr.boxplot | Source code |
| ccr.checkCounts | Man page Source code |
| ccr.cleanChrm | Man page Source code |
| ccr.cohens_d | Source code |
| ccr.correctCounts | Man page Source code |
| ccr.countToDist | Source code |
| ccr.dfToFile | Source code |
| ccr.fixedFDRthreshold | Source code |
| ccr.geneMeanFCs | Man page Source code |
| ccr.geneSummary | Man page Source code |
| ccr.genes2sgRNAs | Man page Source code |
| ccr.get.CCLEgisticSets | Man page Source code |
| ccr.get.gdsc1000.AMPgenes | Man page Source code |
| ccr.get.guideSets | Source code |
| ccr.get.nonExpGenes | Man page Source code |
| ccr.getCounts | Man page Source code |
| ccr.getLibrary | Man page Source code |
| ccr.impactOnPhenotype | Man page Source code |
| ccr.logFCs2chromPos | Man page Source code |
| ccr.multDensPlot | Man page Source code |
| ccr.perf_distributions | Man page Source code |
| ccr.perf_statTests | Man page Source code |
| ccr.randomised_ROC | Source code |
| ccr.sd_guideFCs | Source code |
| ccr.sgRNAmeanFCs | Man page Source code |
