genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

Getting started

Package details

Bioconductor views ComparativeGenomics FunctionalGenomics MathematicalBiology MultipleSequenceAlignment WholeGenome
Maintainer
LicenseArtistic-2.0
Version1.6.0
URL https://github.com/genomaths/GenomAutomorphism
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("genomaths/GenomAutomorphism")
genomaths/GenomAutomorphism documentation built on May 10, 2024, 12:11 a.m.