HBDSegments | R Documentation |
This function creates HBDsegments used for creating plots
HBDSegments(submaps, n.consecutive.markers = 5, threshold = 0.5)
submaps |
a atlas object |
n.consecutive.markers |
the number of consecutive markers with a probabilitie equal or greater to the value of the threshold, to be use to fing HBDsegments (default is 5) |
threshold |
the minimum value of HBD probabilities given for a marker (default is 0.5) |
The threshold is the minimum value from which we consider the marker is HBD. From this marker we want a minumum number of consecutive markers to create a HBD segment. (argument : n.consecutive.markers)
This function returns a list of dataframe with 11 columns :
- id
- famid
- pheno
- start
- end
- size
- chromosome
- start_pos
- end_pos
- start_dist
- end_dist
setSummary
setHBDProb
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