HFLODPlotChr: Plot of the HFLOD

In genostats/FEstim: Genetic Data Analyses in Presence of Inbreeding

Plot of the HFLOD

Description

This fonction plot the HFLOD score for a chromosome

Usage

HFLODPlotChr(
  submaps,
  unit = "cM",
  chr,
  regions,
  color2 = "green4",
  MA = TRUE,
  nbSNP_MA = 50
)

Arguments

submaps	a atlas object
unit	the unit used to plot, two options are allowed "Bases", "cM" (default is "CM")
chr	the chromosome number from which to plot HFLOD score
regions	a matrix containing the value to ve highlighted in the plot
color2	the color of the regions highlighted (default is "green4")
MA	a boolean indicating whether a red line has to be drawn for the moving average
nbSNP_MA	number of SNP for the moving average (default is 50)

Details

If you use the regions options make sure to pass a matrix containing one line per region to be highlighted with in each line :

- the chromosome number

- start

- end

Value

This function returns a manhattan plot of all the HFLOD score over all the chromosome

See Also

setHFLOD

Examples

 
#Please refer to vignette 

genostats/FEstim documentation built on Feb. 3, 2023, 7:33 p.m.