HFLODManhattanPlot: Creation of an manhattan plot of the HFLOD

In genostats/FEstim: Genetic Data Analyses in Presence of Inbreeding

Creation of an manhattan plot of the HFLOD

Description

This fonction to plot a manhanttan plot of the HFLOD score

Usage

HFLODManhattanPlot(submaps, regions, unit = "cM", MA = TRUE, nbSNP_MA = 50)

Arguments

submaps	a atlas object
regions	a matrix containing the value to be highlighted in the plot
unit	the unit used to plot, two options are allowed "Bases", "cM" (default is "CM")
MA	a boolean indicating whether a red line has to be drawn for the moving average
nbSNP_MA	number of SNP for the moving average (default is 50)

Details

If you use the regions options make sure to pass a matrix containing one line per region to be highlighted with in each line :

- the chromosome number

- start

- end

Value

This function returns a manhattan plot of all the HFLOD score over all the chromosome

See Also

setHFLOD

Examples

#Please refer to vignette 

genostats/FEstim documentation built on Feb. 3, 2023, 7:33 p.m.