initialize-HostspotsMatrix-method: Constructor method of HostspotsMatrix.
In genostats/FEstim: Genetic Data Analyses in Presence of Inbreeding
initialize,HostspotsMatrix-method R Documentation
Constructor method of HostspotsMatrix.
Description
Constructor method of HostspotsMatrix.
Usage
## S4 method for signature 'HostspotsMatrix'
initialize(.Object, ncol, nrow, submap, ped, map, log.emiss, epsilon = 0.001)
Arguments
.Object
the object type
ncol
number of loci
nrow
number of individual
submap
a list of submaps
ped
the first 6 columns of a .ped
map
id, chr, distance
log.emiss
matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
epsilon
value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation
genostats/FEstim documentation built on Feb. 3, 2023, 7:33 p.m.
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| initialize,HostspotsMatrix-method | R Documentation |
Constructor method of HostspotsMatrix.
Description
Constructor method of HostspotsMatrix.
Usage
## S4 method for signature 'HostspotsMatrix' initialize(.Object, ncol, nrow, submap, ped, map, log.emiss, epsilon = 0.001)
Arguments
.Object |
the object type |
ncol |
number of loci |
nrow |
number of individual |
submap |
a list of submaps |
ped |
the first 6 columns of a .ped |
map |
id, chr, distance |
log.emiss |
matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats) |
epsilon |
value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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