initialize-snpsMatrix-method: Constructor method of snpsMatrix.

In genostats/FEstim: Genetic Data Analyses in Presence of Inbreeding

Constructor method of snpsMatrix.

Description

Constructor method of snpsMatrix.

Usage

## S4 method for signature 'snpsMatrix'
initialize(
  .Object,
  step,
  ncol,
  nrow,
  submap,
  ped,
  map,
  log.emiss,
  epsilon = 0.001
)

Arguments

.Object	the object type
step	the step use to take step in a mini segments (refer to vignette for more infos)
ncol	number of loci
nrow	number of individual
submap	a list of submaps
ped	the first 6 columns of a .ped
map	id, chr, distance
log.emiss	matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
epsilon	value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation

genostats/FEstim documentation built on Feb. 3, 2023, 7:33 p.m.