initialize,snpsMatrix-method | R Documentation |
Constructor method of snpsMatrix.
## S4 method for signature 'snpsMatrix' initialize( .Object, step, ncol, nrow, submap, ped, map, log.emiss, epsilon = 0.001 )
.Object |
the object type |
step |
the step use to take step in a mini segments (refer to vignette for more infos) |
ncol |
number of loci |
nrow |
number of individual |
submap |
a list of submaps |
ped |
the first 6 columns of a .ped |
map |
id, chr, distance |
log.emiss |
matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats) |
epsilon |
value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation |
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