HostspotsMatrix-class: Class HostspotsMatrix
In genostats/FEstim: Genetic Data Analyses in Presence of Inbreeding
HostspotsMatrix-class R Documentation
Class HostspotsMatrix
Description
Class HostspotsMatrix This class is use to create an object that will represent the submap created
Slots
submapa vector of index
ncolnumber of loci
nrownumber of individual
pedthe first 6 columns of a .ped
mapid, chr, distance
epsilonvalue of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation
delta.distdifference of map$distance
log.emissmatrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
avalue of a estimated by festim
fvalue of f estimated by festim
likelihood0likelihood under H0 (f = 0)
likelihood1likelihood under H1
p.lrtlikelihood ratio test
HBD.probproba HBD = 1 ; one individual per column : dim = (nb inds x nb msats)
FLODmatrix of FLOD scores dim = (nb inds x nb msats)
genostats/FEstim documentation built on Feb. 3, 2023, 7:33 p.m.
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| HostspotsMatrix-class | R Documentation |
Class HostspotsMatrix
Description
Class HostspotsMatrix This class is use to create an object that will represent the submap created
Slots
submapa vector of index
ncolnumber of loci
nrownumber of individual
pedthe first 6 columns of a .ped
mapid, chr, distance
epsilonvalue of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation
delta.distdifference of map$distance
log.emissmatrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
avalue of a estimated by festim
fvalue of f estimated by festim
likelihood0likelihood under H0 (f = 0)
likelihood1likelihood under H1
p.lrtlikelihood ratio test
HBD.probproba HBD = 1 ; one individual per column : dim = (nb inds x nb msats)
FLODmatrix of FLOD scores dim = (nb inds x nb msats)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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