API for genostats/Fantasio
Genetic Data Analyses in Presence of Inbreeding
| Global functions | |
|---|---|
| Fantasio | Man page |
| HBDOverlap | Source code |
| HBDPlotChr | Man page Source code |
| HBDPlotId | Man page Source code |
| HBDSegments | Man page Source code |
| HBDSegmentsBySegments | Source code |
| HBDSegmentsBySnps | Source code |
| HFLODManhattanPlot | Man page Source code |
| HFLODPlotChr | Man page Source code |
| HostspotsMatrix-class | Man page |
| HostspotsSegments-class | Man page |
| Likelihood | Source code |
| atlas-class | Man page |
| bedLogEmiss | Source code |
| cleanHotspots | Source code |
| cytobands | Man page |
| cytobands.b35 | Man page |
| cytobands.b36 | Man page |
| cytobands.b37 | Man page |
| cytobands.b38 | Man page |
| dim,fMatrix-method | Man page |
| fMatrix-class | Man page |
| festim | Man page Source code |
| festim_fmatrix | Source code |
| festim_submapslist | Source code |
| forwardBackward | Source code |
| forward_backward | Source code |
| get.famid | Source code |
| get.id | Source code |
| getIdOverlap | Source code |
| getLogEmiss | Source code |
| getMarkerChromosom | Source code |
| getMarkerChromosomByDistance | Source code |
| ggQQPlot | Man page Source code |
| glmHBD | Man page Source code |
| glmHBDPlot | Man page |
| hotspot | Man page |
| hotspot_hg17 | Man page |
| hotspot_hg18 | Man page |
| hotspot_hg19 | Man page |
| initialize,HostspotsMatrix-method | Man page |
| initialize,atlas-method | Man page |
| initialize,fMatrix-method | Man page |
| initialize,snpsMatrix-method | Man page |
| initialize,snpsSegments-method | Man page |
| likelihoodGradient | Source code |
| log.proba.emission | Source code |
| logEmiss | Source code |
| logLikelihood | Source code |
| logLikelihood_gradient | Source code |
| m4_logEmiss | Source code |
| makeAtlasByDistance | Man page Source code |
| makeAtlasByHotspots | Man page Source code |
| makeSubmapByDistance | Man page Source code |
| makeSubmapByHotspots | Man page Source code |
| markerRepresentation | Man page Source code |
| markerSummary | Man page Source code |
| msat.log.emiss | Source code |
| nullRemover | Source code |
| phenoConverter | Man page |
| plotHBDSegmentsChr | Source code |
| plotHBDSegmentsId | Source code |
| plotROHSegmentsChr | Man page Source code |
| plotROHSegmentsId | Man page Source code |
| plotSegmentsChr | Source code |
| random.msat | Source code |
| readMsatMatrix | Source code |
| recap | Man page Source code |
| recapBySegments | Source code |
| recapBySnps | Source code |
| segmentsListByDistance | Man page Source code |
| segmentsListByHotspots | Man page Source code |
| segmentsListSummary | Man page Source code |
| selectMarkerDownstream | Source code |
| selectMarkerUpstream | Source code |
| setAlleleFrequencies | Man page |
| setFLOD | Man page Source code |
| setHBDProb | Man page Source code |
| setHBDProbAndFLOD | Man page Source code |
| setHBDProbAndFLODBySnps | Man page Source code |
| setHFLOD | Man page Source code |
| setStatus | Man page Source code |
| setSummary | Man page |
| show,HostspotsMatrix-method | Man page |
| show,HostspotsSegments-method | Man page |
| show,atlas-method | Man page |
| show,fMatrix-method | Man page |
| show,snpsMatrix-method | Man page |
| show,snpsSegments-method | Man page |
| simu0 | Source code |
| simu_geno | Source code |
| snpsMatrix-class | Man page |
| snpsSegments-class | Man page |
| submapEstim | Man page Source code |
| submapFLODRecap | Source code |
| submapHBDRecap | Source code |
| submapLikelihood | Man page Source code |
| submapSummary | Man page Source code |
| uniqueIds | Source code |
| unitPlotChr | Source code |
| unitPlotId | Source code |
