append_hues2: Add Hu moments data.frame to a cell_data object
In gerbeldo/tidycell: CellID Data Analysis Inside the Tidyverse

append_hues2

R Documentation

Add Hu moments data.frame to a cell_data object

Description

The required TSV are generated by the mask_mod branch of the CellID program found at: https://github.com/darksideoftheshmoo/cellID-linux/tree/mask_mod

Usage

append_hues2(
  tsv_files_df,
  cell_data = NULL,
  return_points = F,
  parralellize = T,
  shape_pixtype = "b",
  shape_flagtype = 0,
  overwrite = F
)

Arguments

`tsv_files_df`	A data.frame with paths to the TSV files with the cells' XY coordinates, generated by CellID mask_mod's "-t" option. Use `tsv_paths_from_args()` for convenience.
`cell_data`	NULL list by default. You may pass a cell.data list object from rcell2::load_cell_data, for convenience, or just the cdata dataframe as `list(data = cdata)`.
`return_points`	if TRUE it will add a "masks" dataframe to the cell_data object, containing the mask coordinates.
`parralellize`	Enable cell-wise parallelization using parallel::parLapply
`shape_pixtype`	Default "b" for Hu moments based on boundary points. A character vector containing any of c("b", "i").
`shape_flagtype`	Default 0 for Hu moments based on flag value 0. Can be any of the integer flag values present in the `out_bf_fl_mapping` CellID files.
`overwrite`	Default FALSE, overwrite Hu moments element in the input list if already present.