hues_from_tsv2 | R Documentation |
Cells in the dataframe are split by cellID, t.frame, flag, and pixtype by default.
hues_from_tsv2( masks_tsv_path, .parallel = F, shape_pixtype = "b", shape_flagtype = 0, cdata_subset = NULL, position = NULL )
masks_tsv_path |
A path to the TSV file holding XY coordinates, from CellID's output with "-t" option. |
.parallel |
Enable cell-wise parallelization using parallel::parLapply |
shape_pixtype |
Default "b" for Hu moments based on boundary points. A character vector containing any of c("b", "i"). |
shape_flagtype |
Default 0 for Hu moments based on flag value 0. Can be any of the integer flag values present in the |
cdata_subset |
Subset of cdata with unique rows, and only pos, t.frame and cellID columns. |
position |
Microscope position number (int) that corresponds to current TSV file, used for filtering if |
Optional filtering by shape type (boundary or interior) and CellID flag number.
Optional cell-wise parallelization.
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