cellSpread: 2D binning of data and tiling of cell pictures

In gerbeldo/tidycell: CellID Data Analysis Inside the Tidyverse

2D binning of data and tiling of cell pictures

Description

2D binning of data and tiling of cell pictures

Usage

cellSpread(
  cdata,
  paths,
  ch = "BF.out",
  boxSize = 80,
  xvar = "a.tot",
  yvar = "fft.stat",
  x.cuts = 7,
  y.cuts = 7,
  for_plotting = F,
  ...
)

Arguments

cdata	A Rcell data.frame (not the object).
paths	A paths dataframe with file path, t.frame, position and channel information of each picture.
ch	Name of the CellID channel (BF, BF.out, RFP, etc.). "BF.out" by default.
boxSize	Size of the box containing the individual cell images. 50 by default.
xvar, yvar	Strings indicating names for the variables to plot in the horizontal (x) and vertical (y) axis.
x.cuts, y.cuts	Integers indicating the number of cuts for each variable.
for_plotting	Return value changes to list of elements important for plotting.
...	Arguments passed on to magickCell.

gerbeldo/tidycell documentation built on Aug. 15, 2022, 2:35 p.m.