cimage.cell.data: cimage.cell.data

View source: R/cimage.R

cimage.cell.dataR Documentation

cimage.cell.data

Description

calls cimage.cell.image

Usage

## S3 method for class 'cell.data'
cimage(
  X,
  formula = NULL,
  facets = NULL,
  qc.filter = TRUE,
  time.var = c("*time*", "t.frame", "z.scan", "z.slice"),
  time.course = NULL,
  select = NULL,
  exclude = NULL,
  normalize.group = "channel",
  invert.lut = FALSE,
  N = NULL,
  ...
)

Arguments

X

cell.data or cell.image object to plot

formula

formula of the form 'var1+var2~var3' specifying how the images are to be ordered. See details.

facets

formula of the form 'var1+var2~var3' specifying how to facet the plot. See details.

qc.filter

a boolean value indicating if the quality control filter should be applied over the data

time.var

variables that indicate time and should be excluded from the grouping variables. See get_cell_image

time.course

boolean indicating if the image layout represents a time course and several images of the same cell at different times are expected

select

character vector defining further variables that are required for the plot

exclude

character vector defining variable names to be excluded

normalize.group

variable names that define groups of images that should be normalized together

invert.lut

boolean indicating if Look Up Table should be inverted

N

Number of random cells to select from each group. If NA or 'all', all cells are selected.

...

further arguments for methods. cimage calls get_cell_image, so all the arguments of this function are available.


gerbeldo/tidycell documentation built on Aug. 15, 2022, 2:35 p.m.