cimage.cell.data | R Documentation |
calls cimage.cell.image
## S3 method for class 'cell.data' cimage( X, formula = NULL, facets = NULL, qc.filter = TRUE, time.var = c("*time*", "t.frame", "z.scan", "z.slice"), time.course = NULL, select = NULL, exclude = NULL, normalize.group = "channel", invert.lut = FALSE, N = NULL, ... )
X |
cell.data or cell.image object to plot |
formula |
formula of the form 'var1+var2~var3' specifying how the images are to be ordered. See details. |
facets |
formula of the form 'var1+var2~var3' specifying how to facet the plot. See details. |
qc.filter |
a boolean value indicating if the quality control filter should be applied over the data |
time.var |
variables that indicate time and should be excluded from the grouping variables.
See |
time.course |
boolean indicating if the image layout represents a time course and several images of the same cell at different times are expected |
select |
character vector defining further variables that are required for the plot |
exclude |
character vector defining variable names to be excluded |
normalize.group |
variable names that define groups of images that should be normalized together |
invert.lut |
boolean indicating if Look Up Table should be inverted |
N |
Number of random cells to select from each group. If NA or 'all', all cells are selected. |
... |
further arguments for methods. |
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