cellSpreadPlot | R Documentation |
Plot for 2D binning of data and tiling of cell pictures
cellSpreadPlot( cdata, paths, ch = "BF.out", boxSize = 80, xvar = "a.tot", yvar = "fft.stat", overlay_points = F, underlay_points = F, draw_contour_breaks = NULL, x.cuts = 7, y.cuts = 7, ... )
cdata |
A Rcell data.frame (not the object). |
paths |
A paths dataframe with file path, t.frame, position and channel information of each picture. |
ch |
Name of the CellID channel (BF, BF.out, RFP, etc.). "BF.out" by default. |
boxSize |
Size of the box containing the individual cell images. 50 by default. |
xvar |
Strings indicating names for the variables to plot in the horizontal (x) and vertical (y) axis. |
yvar |
Strings indicating names for the variables to plot in the horizontal (x) and vertical (y) axis. |
overlay_points |
Overlay data points to the image plot. |
underlay_points |
Underlay data points to the image plot. |
draw_contour_breaks |
Overlay a ggplot2::stat_density2d layer. If TRUE, use the default breaks. Otherwise NULL for none, or a numeric vector for the density breaks. |
x.cuts |
Integers indicating the number of cuts for each variable. |
y.cuts |
Integers indicating the number of cuts for each variable. |
... |
Arguments passed on to magickCell. |
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