View source: R/cellid_wrapper.R
cell.load.alt | R Documentation |
Cargar el output de cell-id
cell.load.alt( path, pdata = NULL, position.pattern = ".*Position(\\d+).*", fluorescence.pattern = "^([GCYRT]FP|[GCYRT]\\d{2})_Position\\d+_time\\d+.tif$", ucid.zero.pad = 4, append.posfix = NULL, ... )
path |
Path to images directory |
pdata |
Path to metadata CSV file |
position.pattern |
Regex describing what the position string looks like (default ".*Position(\d+).*") including a capturing group for the position ID number (coerced to integer). |
fluorescence.pattern |
Regex describing what the fluorescence/channel ID string looks like (default "^([GCYRT]FP|[GCYRT]\d2)_Position\d+_time\d+.tif$") |
ucid.zero.pad |
Amount of decimal digits for the cellID (defaults 4, corresponding to a maximum of 9.999 cellIDs and 9999 positions). |
append.posfix |
String appended to the channel ID extracted by 'fluorescence.pattern' ('NULL' by default, but "FP" is usual). |
... |
Arguments passed on to |
A list of dataframes: data (CellID data), images (images metadata and paths), image_maping (extra mapping metadata from CellID: BF to FL correspondence, channel flag, bf_as_fl flag, and one-letter channel encoding).
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