cellGif: cellMagick configured for prodicing a ucid's gif

In gerbeldo/tidycell: CellID Data Analysis Inside the Tidyverse

cellMagick configured for prodicing a ucid's gif

Description

cellMagick configured for prodicing a ucid's gif

Usage

cellGif(
  cdata,
  paths,
  equalize_images = F,
  normalize_images = F,
  channels = c("BF.out"),
  animation_delay = 1/3,
  id_column = "ucid",
  time_colum = "t.frame",
  stack_channels_horizontally = TRUE,
  ...
)

Arguments

cdata	A Rcell data.frame (not the object).
paths	A paths dataframe with file path, t.frame, position and channel information of each picture.
equalize_images	Use magick's function to "equalize" the image when TRUE (FALSE by default).
normalize_images	Use magick's function to "normalize" the image when TRUE (FALSE by default).
channels	Name of the CellID channel (BF, BF.out, RFP, etc.). "BF.out" by default.
animation_delay	Delay between animation frames in seconds.
stack_channels_horizontally	Time increases from left to right (TRUE) or from up to down (FALSE).
...	Arguments passed on to magickCell.

gerbeldo/tidycell documentation built on Aug. 15, 2022, 2:35 p.m.