all.unique | Test whether all elements in a vector are unique |
annotation_magick | Funcion copada para mostrar fotos basada en magick |
append_hues | Append Hu moments columns to data on a cell_data object |
append_hues2 | Add Hu moments data.frame to a cell_data object |
applyFilter | Add TRUTH column to cdata |
arguments | Obtener argumentos para CellID |
bind_filters | Bind shinyCell polygon filters by variable pairs |
calculate_extra_morpho_vars | calculate_extra_morpho_vars |
cargar.out_all | Una función para leer y combinar todos los archivos "out". |
cell2 | Function to run CellID |
cellArgs2 | Obtener argumentos para CellID |
cellArgs2.summary | cellArgs2 Summaries |
cellGif | cellMagick configured for prodicing a ucid's gif |
cellid | Correr Cell-ID desde R usando .C() |
cell.load.alt | Cargar el output de cell-id |
cell.load.boundaries | Load cellid boundary data to a dataframe |
cellMagick | magickCell alias |
cellSpread | 2D binning of data and tiling of cell pictures |
cellSpreadPlot | Plot for 2D binning of data and tiling of cell pictures |
cellStrip | cellMagick configured for prodicing a ucid's strip |
cellStrips | Wraps cellMagick to make strips, optionally cutting them. |
check_tiff_mask | Make plots to examine correspondence between mean mask... |
check_tiff_mask2 | Make plots to examine correspondence between mean mask... |
cimage | cimage |
cimage.cell.data | cimage.cell.data |
cimage.cell.image | cimage.cell.image |
cluster_test | Cluster test |
d | d |
dot-format.sequence | Format sequence of numbers |
dot-mk_flag_table | Make Flag Table |
dot-parse_load_vars | Parse Names of Variables to Load |
getCellGeom | Geometria para agarrar un cuadradito de una imagen con magick... |
get_cell_image | Title |
get_cell_image.cell.data | get_cell_image |
get_cell_image.data.frame | get_cell_image.data.frame |
getFacetVars | Una función para procesar el facet string y que devuelva las... |
get_fit_vars | get_fit_vars |
getPositions | Get a list of numbers from the "position" input string |
get_workflow_template | A function to donwload the latest worflow tempalte in... |
helloWorld | Say hi! |
hexPlotDf | Funcion para armar un dataframe para hacer plots tipo HEX |
hover_closest | Find cell closest to hover point in shiny |
hues_from_tsv2 | Generate Hu moments from XY coordinates TSV file |
hues_from_tsv_files2 | Generate Hu moments data frame from one or more TSV files |
hues_from_xy | Generate Hu moments from XY coordinates dataframe |
hues_from_xy2 | Generate Hu moments from XY coordinates dataframe |
hu.moments | Hu moments |
is.cell.data | is cell data |
kmeans_clustering | K-means clustering |
load_cell_data | Load cellID data |
magickCell | Funcion copada para mostrar fotos de Cell-ID basada en magick |
magickForKnitr | Display an image in rmarkdown with knitr |
magickPaths | Extaer paths para cellMagick del objeto cell.data |
myhexbin | Función hexbin Esencialmente hexbin() pero un poco más a mi... |
numbers_to_intervals | convert sequence of numbers to ranges |
parameters.default | Default parameters list for Cell-ID |
parameters.write | Write parameters to a [temporary] file |
pic_df_from_tiff | Generate a dataframe with boundary coordinates from mask tiff... |
pip | Polygon filtering function using "sp" package |
pipe | Pipe |
plotApp | Filtrar cdata usando gráficos y dibujando regiones |
plotAppServer | Shiny app server function for shinyCell Define server logic... |
plotAppUI | Shiny app UI object for shinyCell |
plot_bound_filters | Plot bound shinyCell polygon filters by variable pairs |
plot_filters | Plot shinyCell polygon filters |
polyFilterApply | Apply polygonal filters to cdata |
polyFilterCell | Build filterDF from polygonDF and cdataDF |
qc_execute | qc_execute |
qc_filter | qc_filter |
qc_reset | qc_reset |
qc_undo | qc_undo |
rangeExpand | rangeExpand |
rcell2 | Yeast Cell Cytometry Suite for CellID in R. |
read_coords_tsv | Read TSV file with mask coords |
read_tiff_masks | Read cell masks from BF.out |
read_tiff_tags | Read TIFF tag information. |
read_tsv.con.pos | Una función que lea un .csv y les agregue una columna con un... |
shinyAppServer | Shiny app server function for shinyCell Define server logic... |
shinyAppUI | Shiny app UI object for shinyCell |
shinyCell | Filtrar cdata usando gráficos y dibujando regiones |
smooth.spline.poly | whuber's spline.poly adapted to stats::smooth.spline |
spline.poly | Splining a polygon with 'stats::spline' |
square | Return brush vertices |
square_tile | Armar mosaicos cuadrados a partir de un vector de imagenes en... |
standardise_data | standardise_data |
standardize_data | standardize_data |
tagCell | Filtrar cdata usando gráficos y dibujando regiones |
tagCellServer | Shiny app server function for tagCell Define server logic... |
tagCellUi | Shiny app UI object for tagCell |
tsv_paths_from_args | Generate data.frame with paths to coordinate TSV files |
updateList | Update a list's value using another list, by common names. |
write.delim | write tab delimited file |
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