rcell2 | R Documentation |
It is a rewrite and revamp of the previously awesome Rcell package, by Dr. Alan Bush. Plotting functions from that package have been excluded in the name of minimalism. Thoughfully, ggplot2 definitions for all those "cplots" are available in our vignettes (happy copy-pasting!).
The cellMagick package provides three categories of important functions: cellMagick, tidyCell and shinyCell.
The tidyCell functions run CellID and/or manage it's output. Also useful to turn custom data into compatible dataframes for the other functions in this package.
Renders images from individual cells, based on original images, user defined filters and data from cells. It should not be required that the data comes from images processed by CellID. Requirement of the imagemagick library might bother some, so this awesome feature is optional.
R-Shiny based graphical interface to filter cells by arbitrary variables, and inspect and annotate cells. It should not be required that the data comes from images processed by CellID.
magick
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