rcell2: Yeast Cell Cytometry Suite for CellID in R.
In gerbeldo/tidycell: CellID Data Analysis Inside the Tidyverse
rcell2 R Documentation
Yeast Cell Cytometry Suite for CellID in R.
Description
It is a rewrite and revamp of the previously awesome Rcell package, by Dr. Alan Bush.
Plotting functions from that package have been excluded in the name of minimalism.
Thoughfully, ggplot2 definitions for all those "cplots" are available in our vignettes (happy copy-pasting!).
Details
The cellMagick package provides three categories of important functions:
cellMagick, tidyCell and shinyCell.
tidyCell functions
The tidyCell functions run CellID and/or manage it's output.
Also useful to turn custom data into compatible dataframes for the other functions in this package.
cellMagick functions
Renders images from individual cells, based on original images, user defined filters and data from cells.
It should not be required that the data comes from images processed by CellID.
Requirement of the imagemagick library might bother some, so this awesome feature is optional.
shinyCell functions
R-Shiny based graphical interface to filter cells by arbitrary variables, and inspect and annotate cells.
It should not be required that the data comes from images processed by CellID.
See Also
magick
gerbeldo/tidycell documentation built on Aug. 15, 2022, 2:35 p.m.
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| rcell2 | R Documentation |
Yeast Cell Cytometry Suite for CellID in R.
Description
It is a rewrite and revamp of the previously awesome Rcell package, by Dr. Alan Bush. Plotting functions from that package have been excluded in the name of minimalism. Thoughfully, ggplot2 definitions for all those "cplots" are available in our vignettes (happy copy-pasting!).
Details
The cellMagick package provides three categories of important functions: cellMagick, tidyCell and shinyCell.
tidyCell functions
The tidyCell functions run CellID and/or manage it's output. Also useful to turn custom data into compatible dataframes for the other functions in this package.
cellMagick functions
Renders images from individual cells, based on original images, user defined filters and data from cells. It should not be required that the data comes from images processed by CellID. Requirement of the imagemagick library might bother some, so this awesome feature is optional.
shinyCell functions
R-Shiny based graphical interface to filter cells by arbitrary variables, and inspect and annotate cells. It should not be required that the data comes from images processed by CellID.
See Also
magick
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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