convert.clone.to.branch: Create a tree from the merged.tree data.frame in clonevol...
In hdng/clonevol: Clonal ordering and visualization
Description
Usage
Arguments
Value
Description
Create a branch-based clonal evolution tree from tree data.frame
Usage
1
2
convert.clone.to.branch(t, branch.lens = NULL,
merged.tree.node.annotation = "sample.with.nonzero.cell.frac.ci")
Arguments
t:
merged.tree data frame from clonevol
branch.lens:
named vector of branch lengths, named according
to the cluster/clone ID/name. If not provided, all branches will receive
a same length
Value
Returns the same data.frame with additional columns, including:
$branches –> symbols of the branches corresponding to the clone
$blengths –> branch lengths
hdng/clonevol documentation built on May 17, 2019, 3:19 p.m.
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Description Usage Arguments Value
Description
Create a branch-based clonal evolution tree from tree data.frame
Usage
1 2 | convert.clone.to.branch(t, branch.lens = NULL,
merged.tree.node.annotation = "sample.with.nonzero.cell.frac.ci")
|
Arguments
t: |
merged.tree data frame from clonevol |
branch.lens: |
named vector of branch lengths, named according to the cluster/clone ID/name. If not provided, all branches will receive a same length |
Value
Returns the same data.frame with additional columns, including: $branches –> symbols of the branches corresponding to the clone $blengths –> branch lengths
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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