convert.clone.to.branch: Create a tree from the merged.tree data.frame in clonevol...

Description Usage Arguments Value

Description

Create a branch-based clonal evolution tree from tree data.frame

Usage

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convert.clone.to.branch(t, branch.lens = NULL,
  merged.tree.node.annotation = "sample.with.nonzero.cell.frac.ci")

Arguments

t:

merged.tree data frame from clonevol

branch.lens:

named vector of branch lengths, named according to the cluster/clone ID/name. If not provided, all branches will receive a same length

Value

Returns the same data.frame with additional columns, including: $branches –> symbols of the branches corresponding to the clone $blengths –> branch lengths


hdng/clonevol documentation built on May 17, 2019, 3:19 p.m.