API for hdng/clonevol
Clonal ordering and visualization
| Global functions | |
|---|---|
| adjust.clone.vaf | Man page |
| assign.events.to.clones | Man page |
| assign.events.to.clones.of.a.tree | Man page |
| boot.vaf.ci | Man page |
| clone.vaf.diff | Man page |
| compare.clone.trees | Man page |
| compare.clone.trees.removing.leaves | Man page |
| convert.clone.to.branch | Man page |
| convert.consensus.tree.clone.to.branch | Man page |
| createFishPlotObjects | Man page |
| cross.rule.score | Man page |
| cutBigValue | Man page |
| determine.subclone | Man page |
| draw.branch | Man page |
| draw.clone | Man page |
| draw.sample.clones | Man page |
| draw.sample.clones.all | Man page |
| enumerate.clones | Man page |
| estimate.ccf | Man page |
| estimate.clone.vaf | Man page |
| extract.mapped.events | Man page |
| find.matched.models | Man page |
| generate.boot | Man page |
| generate.boot.nonparametric | Man page |
| generate.cloud.of.cells | Man page |
| generate.fill.points | Man page |
| generateFishplotInputs | Man page |
| germinate | Man page |
| get.cell.frac.ci | Man page |
| get.clonevol.colors | Man page |
| get.model.max.p.value | Man page |
| get.model.non.negative.ccf.prob | Man page |
| get.subclones.across.samples | Man page |
| import.tree | Man page |
| infer.clonal.models | Man page |
| insert.lf | Man page |
| is.ancestor | Man page |
| make.clonal.data.frame | Man page |
| make.graph | Man page |
| match.sample.clones | Man page |
| merge.all.matched.clone.trees | Man page |
| merge.clone.trees | Man page |
| merge.samples | Man page |
| merge.variants.and.events | Man page |
| plot.all.trees.clone.as.branch | Man page |
| plot.cell.population | Man page |
| plot.clonal.models | Man page |
| plot.clonevol.colors | Man page |
| plot.cloud.of.cells | Man page |
| plot.cluster.flow | Man page |
| plot.pairwise | Man page |
| plot.plant | Man page |
| plot.tree | Man page |
| plot.tree.clone.as.branch | Man page |
| plot.variant.clusters | Man page |
| replaceNA | Man page |
| rescale.vaf | Man page |
| save.clonevol.results | Man page |
| scale.cell.frac | Man page |
| scale.sample.position | Man page |
| set.position | Man page |
| subclonal.test | Man page |
| transfer.events.to.consensus.trees | Man page |
| trim.clone.trees | Man page |
| write.tree | Man page |
