rescale.vaf: Rescale VAF of subclones for visualzation purpose
In hdng/clonevol: Clonal ordering and visualization
Description
Rescale VAF of subclones such that their total VAF must not
exceed their parent clone VAF. When infered using bootstrap test, sometime
the estimated total mean/median VAFs of subclones > VAF of parent clones
which makes drawing difficult (ie. subclone receive wider polygon than parent
clone. This function rescale the VAF of the subclone for drawing purpose
only, not for the VAF estimate.
Usage
1
rescale.vaf(v, down.scale = 0.99)
Arguments
v:
clonal structure data frame as output of enumerate.clones
hdng/clonevol documentation built on May 17, 2019, 3:19 p.m.
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Description
Rescale VAF of subclones such that their total VAF must not exceed their parent clone VAF. When infered using bootstrap test, sometime the estimated total mean/median VAFs of subclones > VAF of parent clones which makes drawing difficult (ie. subclone receive wider polygon than parent clone. This function rescale the VAF of the subclone for drawing purpose only, not for the VAF estimate.
Usage
1 | rescale.vaf(v, down.scale = 0.99)
|
Arguments
v: |
clonal structure data frame as output of enumerate.clones |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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