estimate.ccf: Calculate CI of CCF, pvals, etc.
In hdng/clonevol: Clonal ordering and visualization
Description
Calculate CI of CCF, pvals, etc.
Usage
1
2
estimate.ccf(vx, sample, i, boot, min.cluster.vaf, alpha, t = NULL,
sub.clusters = NULL)
Arguments
vx:
clonal evolution of a sample data frame
sample:
name of vaf.col
i:
row of vx where clone needs to be estimated
boot:
pregenerated bootstrap
min.cluster.vaf:
minimum cluster vaf to consider non-zero
alpha:
alpha of CI
t:
if subclonal.test was run already, provide the return object, if NULL
subclonal.test will be run
Return vx with additionally annotated columns related to CCF
hdng/clonevol documentation built on May 17, 2019, 3:19 p.m.
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Description
Calculate CI of CCF, pvals, etc.
Usage
1 2 | estimate.ccf(vx, sample, i, boot, min.cluster.vaf, alpha, t = NULL,
sub.clusters = NULL)
|
Arguments
vx: |
clonal evolution of a sample data frame |
sample: |
name of vaf.col |
i: |
row of vx where clone needs to be estimated |
boot: |
pregenerated bootstrap |
min.cluster.vaf: |
minimum cluster vaf to consider non-zero |
alpha: |
alpha of CI |
t: |
if subclonal.test was run already, provide the return object, if NULL subclonal.test will be run Return vx with additionally annotated columns related to CCF |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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