merge.variants.and.events: Merge variants and mapped events onto the same data frame...

In hdng/clonevol: Clonal ordering and visualization

Description

Merge variants and mapped.events data frame to a single data frame for fancy boxplot. Generally the columns of the two data frames should be named the same, including (cluster.col.name, vaf.col.names, cn.col.names, loh.col.names, column to highlight (driver), cluster, event). event column should match between the two and events in mapped.events will be excluded from variants data frame before merging them to prevent duplicate

Usage

## S3 method for class 'variants.and.events'
merge(variants, mapped.events = NULL,
  cluster.col.name = "cluster", event.col.name = "event", vaf.col.names,
  cn.col.names = c(), loh.col.names = c(), other.col.names = c())

Arguments

variants:	variant data frame
mapped.events:	data frame of events mapped onto cluster/clone that is output assign.events.to.clones()$events

hdng/clonevol documentation built on May 17, 2019, 3:19 p.m.