Files in hongzhonglu/Yeastspot3D
Mutation mapping analysis with protein 3D structure for yeast
.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/.Rapp.history
R/PDB_parse.R
R/basic_function_in_cluster_analysis.R
R/clumps_analysis.R
R/gene_annotation.R
R/general_function.R
R/hotspot_analysis.R
R/load_package.R
R/post_process.R
README.md
Yeastspot3D.Rproj
data/ResidueDistance_YBR046C.rda
data/ResidueDistance_YMR246W.rda
data/ResidueDistance_YPR184W.rda
data/gene_feature0.rda
data/pdb_inf_test.rda
data/protein_active_site_sce.rda
data/snp_YBR046C.rda
data/snp_data.rda
man/PositionResidueSNP.Rd
man/ResidueSum.Rd
man/annotateSNP.Rd
man/changeATCG.Rd
man/checkTanslatedProtein.Rd
man/chooseStrain.Rd
man/clumpsAnalysis.Rd
man/clusterAnalysis.Rd
man/countMutationProtein.Rd
man/findPPosition.Rd
man/getDomainCoordinate.Rd
man/getGeneCoordinate.Rd
man/getGeneName.Rd
man/getGeneNameWithSNP.Rd
man/getGeneNameWithSNP1.Rd
man/getHotPvalue.Rd
man/getHotVertice.Rd
man/getMultipleMatchParameter.Rd
man/getOriginalCoordinateProtein.Rd
man/getProteinFromCDS.Rd
man/getPvalue.Rd
man/getSampleWAP.Rd
man/getSingleMatchParameter.Rd
man/getTotalWAP.Rd
man/hotSpotAnalysis.Rd
man/loadPackageForSNPanalysis.Rd
man/mappingCoordinateFrom3DtoProtein.Rd
man/mergeActiveSiteInf.Rd
man/mergeGeneAnnotationFeature.Rd
man/mergeHotspot.Rd
man/parseMutipleSite.Rd
man/parseSingleSite.Rd
man/pdb.ResidueDistance.Rd
man/pdb.ResolutionAll.Rd
man/pdb.ResolutionEX.Rd
man/pdb.Sequence.Rd
man/pdbExFilter.Rd
man/pdbHomoFilter.Rd
man/plotNullDistribution.Rd
man/preprocessSNP.Rd
man/printSNPforGene.Rd
man/qualityCheckFromCDStoProtein.Rd
man/removeStopCoden.Rd
man/sampleStand.Rd
man/snpFilterBasedMAF.Rd
man/splitAndCombine.Rd
tests/testthat.R
vignettes/Vignette.Rmd
