pdbExFilter: Experimental PDB files filtration

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

Remove experimental PDB files of low quality

Usage

pdbExFilter(pdb_EX, pident0 = 100, mismatch0 = 0, resolution0 = 3.4)

Arguments

pdb_EX	A dataframe contains paramters for each experimental pdb file
pident0	Identity between target protein sequence and the residues sequence included in experimental PDB files
mismatch0	Mismatch between target protein sequence and the residues sequence included in experimental PDB files
resolution0	Resolution of PBB file

Value

A dataframe contain the experimental PDB files of high quality

Examples

s1 = data.frame(pident=c(99,98,100),mismatch=c(2,3,0), Resolution=c(6,2,3), stringsAsFactors = FALSE)
pdbExFilter(pdb_EX=s1)

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.