annotateSNP: SNP annotation Annotate the SNP data based on the genome...

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

SNP annotation Annotate the SNP data based on the genome annotation

Usage

annotateSNP(snp_input, gene_feature = gene_feature0)

Arguments

snp_input	A dataframe containing columns of "Chr","Pos","Gene","Ref","Alt" for each SNP
gene_feature	A dataframe containing the detailed information of a gene

Value

A dataframe containing detailed annotation information of each SNP

Examples

# Fistly load the gene annotation data and SNP dataset
data('gene_feature0')
data('snp_data')
mutated_gene <- annotateSNP(snp_input = snp_data, gene_feature = gene_feature0)

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.