qualityCheckFromCDStoProtein: Check the gene annotation quality

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

This function was used to evaluate the quality of gene annotation from cds to protein sequence three check step check 1, ratio of gene and the translated protein—-OK check 2, length of gene—-OK check 3, translated protein seq is equal to that in SGD, index_need_check 570 1220 1221 1222 1223 1224 1225 1226

Usage

qualityCheckFromCDStoProtein(gene_feature_original)

Arguments

gene_feature_original

A dataframe with the initial gene annotation information

Value

A dataframe with the quality check result

Examples

# Firstly run:
gene_feature0 <- mergeGeneAnnotationFeature()
gene_feature0 <- qualityCheckFromCDStoProtein(gene_feature0)

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.