pdb.ResidueDistance: Calculate the distance between each two alpha carbons
In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast
Description
Usage
Arguments
Value
Examples
Description
Calculate the distance between each two alpha carbons
Usage
1
pdb.ResidueDistance(pdbdir, chainID)
Arguments
pdbdir
Dir for a pdb file
chainID
ChainID for a chain
Value
A matrix contains the distance between each two alpha carbons
Examples
1
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3
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library(bio3d)
library(seqinr)
infile <- "xx/data/"
pdbid <- '6cp6.pdb'
pdbdir <- paste(infile, pdbid, sep = "")
pdb.ResidueDistance(pdbdir, chainID = 'K')
hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.
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Description Usage Arguments Value Examples
Description
Calculate the distance between each two alpha carbons
Usage
1 | pdb.ResidueDistance(pdbdir, chainID)
|
Arguments
pdbdir |
Dir for a pdb file |
chainID |
ChainID for a chain |
Value
A matrix contains the distance between each two alpha carbons
Examples
1 2 3 4 5 6 | library(bio3d)
library(seqinr)
infile <- "xx/data/"
pdbid <- '6cp6.pdb'
pdbdir <- paste(infile, pdbid, sep = "")
pdb.ResidueDistance(pdbdir, chainID = 'K')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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