mappingCoordinateFrom3DtoProtein: Coordinate mapping between protein and the related structure

In hongzhonglu/Yeastspot3D: Mutation mapping analysis with protein 3D structure for yeast

Description

This function is used to establish the mapping in the coordinate from protein structure and from protein sequence

Usage

mappingCoordinateFrom3DtoProtein(aa_3d, residue0)

Arguments

aa_3d	A vector for the coordinate of PDB structure
residue0	A vector contained all the muated residue information of the stucture and it can be found the same mutation in residue occured many times
aa_pro	A vector for the original coordinate of protein aa sequence
distance0	A matrix for the distance of the paired residue of pdb structure

Value

A dataframe contains the old coordinate from protein sequence and new coordinate from structure

hongzhonglu/Yeastspot3D documentation built on March 28, 2020, 6:06 p.m.